Ortholog Set 4121297

Ortholog Set 4121313

Analysis ID	4121297
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121314

Analysis ID	4121313
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121315

Analysis ID	4121314
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121316

Analysis ID	4121315
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121317

Analysis ID	4121316
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121318

Analysis ID	4121317
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121319

Analysis ID	4121318
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121320

Analysis ID	4121319
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121321

Analysis ID	4121320
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121322

Analysis ID	4121321
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121323

Analysis ID	4121322
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121324

Analysis ID	4121323
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121325

Analysis ID	4121324
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121312

Analysis ID	4121325
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121311

Analysis ID	4121312
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121298

Analysis ID	4121311
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121299

Analysis ID	4121298
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121300

Analysis ID	4121299
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121301

Analysis ID	4121300
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121302

Analysis ID	4121301
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121303

Analysis ID	4121302
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121304

Analysis ID	4121303
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121305

Analysis ID	4121304
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121306

Analysis ID	4121305
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121307

Analysis ID	4121306
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121308

Analysis ID	4121307
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121309

Analysis ID	4121308
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121310

Analysis ID	4121309
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4121326

Analysis ID	4121310
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	4121326
Cluster ID	168
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas stutzeri A1501
GI	146281044
Locus Tag	PST_0649
Description	ISPsy5, Orf1

StrainPseudomonas stutzeri A1501 GI146283526 Locus TagPST_3201 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146281044 Locus TagPST_0649 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146283695 Locus TagPST_3378 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146283695 Locus TagPST_3378 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146283695 Locus TagPST_3378 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146281031 Locus TagPST_0636 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146283789 Locus TagPST_3472 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146283526 Locus TagPST_3201 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146281040 Locus TagPST_0645 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146283526 Locus TagPST_3201 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146281040 Locus TagPST_0645 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146283789 Locus TagPST_3472 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146283789 Locus TagPST_3472 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146281040 Locus TagPST_0645 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146281031 Locus TagPST_0636 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146283789 Locus TagPST_3472 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146281031 Locus TagPST_0636 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146281044 Locus TagPST_0649 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146283695 Locus TagPST_3378 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146283526 Locus TagPST_3201 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146281031 Locus TagPST_0636 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146281040 Locus TagPST_0645 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146283695 Locus TagPST_3378 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146281044 Locus TagPST_0649 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146283526 Locus TagPST_3201 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146281044 Locus TagPST_0649 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146281031 Locus TagPST_0636 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146281040 Locus TagPST_0645 DescriptionISPsy5, Orf1 StrainPseudomonas stutzeri A1501 GI146283789 Locus TagPST_3472 DescriptionISPsy5, Orf1

Ingroup 2

Strain	Pseudomonas stutzeri DSM 4166
GI	386020437
Locus Tag	PSTAA_1824
Description	IS66 Orf2 family protein

StrainPseudomonas stutzeri DSM 4166 GI386021069 Locus TagPSTAA_2467 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386019270 Locus TagPSTAA_0632 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386022135 Locus TagPSTAA_3558 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386019270 Locus TagPSTAA_0632 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386019543 Locus TagPSTAA_0915 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386021069 Locus TagPSTAA_2467 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386022135 Locus TagPSTAA_3558 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386019270 Locus TagPSTAA_0632 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386020437 Locus TagPSTAA_1824 DescriptionIS66 Orf2 family protein StrainPseudomonas stutzeri DSM 4166 GI386022135 Locus TagPSTAA_3558 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386019270 Locus TagPSTAA_0632 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386019270 Locus TagPSTAA_0632 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386019543 Locus TagPSTAA_0915 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386021069 Locus TagPSTAA_2467 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386020437 Locus TagPSTAA_1824 DescriptionIS66 Orf2 family protein StrainPseudomonas stutzeri DSM 4166 GI386021069 Locus TagPSTAA_2467 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386019270 Locus TagPSTAA_0632 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386022135 Locus TagPSTAA_3558 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386021069 Locus TagPSTAA_2467 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386019543 Locus TagPSTAA_0915 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386022135 Locus TagPSTAA_3558 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386019543 Locus TagPSTAA_0915 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386020437 Locus TagPSTAA_1824 DescriptionIS66 Orf2 family protein StrainPseudomonas stutzeri DSM 4166 GI386021069 Locus TagPSTAA_2467 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386020437 Locus TagPSTAA_1824 DescriptionIS66 Orf2 family protein StrainPseudomonas stutzeri DSM 4166 GI386019543 Locus TagPSTAA_0915 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386019543 Locus TagPSTAA_0915 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386022135 Locus TagPSTAA_3558 DescriptionISPpu14, transposase Orf2 StrainPseudomonas stutzeri DSM 4166 GI386020437 Locus TagPSTAA_1824 DescriptionIS66 Orf2 family protein