Ortholog Set 4100229

Ortholog Set 4100230

Analysis ID 4100229
Cluster ID 3779
Ortholuge Class

No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set.

SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1 0
Ratio 2 0
Local FDR for Ratio 1 0
Local FDR for Ratio 2 0

Ortholog Set 4100231

Analysis ID 4100230
Cluster ID 3779
Ortholuge Class

No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set.

SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1 0
Ratio 2 0
Local FDR for Ratio 1 0
Local FDR for Ratio 2 0

Ortholog Set 4100232

Analysis ID 4100231
Cluster ID 3779
Ortholuge Class

No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set.

SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1 0
Ratio 2 0
Local FDR for Ratio 1 0
Local FDR for Ratio 2 0

Ortholog Set 4100233

Analysis ID 4100232
Cluster ID 3779
Ortholuge Class

No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set.

SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1 0
Ratio 2 0
Local FDR for Ratio 1 0
Local FDR for Ratio 2 0

Ortholog Set 4100234

Analysis ID 4100233
Cluster ID 3779
Ortholuge Class

No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set.

SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1 0
Ratio 2 0
Local FDR for Ratio 1 0
Local FDR for Ratio 2 0

Ortholog Set 4100235

Analysis ID 4100234
Cluster ID 3779
Ortholuge Class

No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set.

SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1 0
Ratio 2 0
Local FDR for Ratio 1 0
Local FDR for Ratio 2 0

Ortholog Set 4100236

Analysis ID 4100235
Cluster ID 3779
Ortholuge Class

No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set.

SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1 0
Ratio 2 0
Local FDR for Ratio 1 0
Local FDR for Ratio 2 0

Ortholog Set 4100237

Analysis ID 4100236
Cluster ID 3779
Ortholuge Class

No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set.

SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1 0
Ratio 2 0
Local FDR for Ratio 1 0
Local FDR for Ratio 2 0
Analysis ID 4100237
Cluster ID 3779
Ortholuge Class

No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set.

SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1 0
Ratio 2 0
Local FDR for Ratio 1 0
Local FDR for Ratio 2 0
Analysis Type Reciprocal Best Blast

No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

StrainPseudomonas putida GB-1
GI167031537
Locus TagPputGB1_0521
DescriptionIS66 Orf2 family protein
StrainPseudomonas putida GB-1 GI167032726 Locus TagPputGB1_1718 DescriptionIS66 Orf2 family protein StrainPseudomonas putida GB-1 GI167032726 Locus TagPputGB1_1718 DescriptionIS66 Orf2 family protein StrainPseudomonas putida GB-1 GI167032726 Locus TagPputGB1_1718 DescriptionIS66 Orf2 family protein StrainPseudomonas putida GB-1 GI167035784 Locus TagPputGB1_4793 DescriptionIS66 Orf2 family protein StrainPseudomonas putida GB-1 GI167031537 Locus TagPputGB1_0521 DescriptionIS66 Orf2 family protein StrainPseudomonas putida GB-1 GI167035784 Locus TagPputGB1_4793 DescriptionIS66 Orf2 family protein StrainPseudomonas putida GB-1 GI167031537 Locus TagPputGB1_0521 DescriptionIS66 Orf2 family protein StrainPseudomonas putida GB-1 GI167035784 Locus TagPputGB1_4793 DescriptionIS66 Orf2 family protein

Ingroup 2

StrainPseudomonas putida S16
GI339488963
Locus TagPPS_4072
DescriptionISPpu15, transposase
StrainPseudomonas putida S16 GI339485992 Locus TagPPS_1065 DescriptionISPpu15, transposase Orf1 StrainPseudomonas putida S16 GI339486355 Locus TagPPS_1428 DescriptionISPpu15, transposase Orf1 StrainPseudomonas putida S16 GI339488963 Locus TagPPS_4072 DescriptionISPpu15, transposase StrainPseudomonas putida S16 GI339486355 Locus TagPPS_1428 DescriptionISPpu15, transposase Orf1 StrainPseudomonas putida S16 GI339486355 Locus TagPPS_1428 DescriptionISPpu15, transposase Orf1 StrainPseudomonas putida S16 GI339485992 Locus TagPPS_1065 DescriptionISPpu15, transposase Orf1 StrainPseudomonas putida S16 GI339485992 Locus TagPPS_1065 DescriptionISPpu15, transposase Orf1 StrainPseudomonas putida S16 GI339488963 Locus TagPPS_4072 DescriptionISPpu15, transposase