Ortholog Set 3779430

Ortholog Set 3779431

Analysis ID	3779430
Cluster ID	876
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3779432

Analysis ID	3779431
Cluster ID	876
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3779433

Analysis ID	3779432
Cluster ID	876
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3779434

Analysis ID	3779433
Cluster ID	876
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3779435

Analysis ID	3779434
Cluster ID	876
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3779435
Cluster ID	876
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas putida KT2440
GI	26990728
Locus Tag	PP_4024
Description	ISPpu15, transposase Orf1

StrainPseudomonas putida KT2440 GI26991428 Locus TagPP_4746 DescriptionISPpu15, transposase Orf1 StrainPseudomonas putida KT2440 GI26991428 Locus TagPP_4746 DescriptionISPpu15, transposase Orf1 StrainPseudomonas putida KT2440 GI26991428 Locus TagPP_4746 DescriptionISPpu15, transposase Orf1 StrainPseudomonas putida KT2440 GI26990728 Locus TagPP_4024 DescriptionISPpu15, transposase Orf1 StrainPseudomonas putida KT2440 GI26990728 Locus TagPP_4024 DescriptionISPpu15, transposase Orf1

Ingroup 2

Strain	Pseudomonas putida S16
GI	339485992
Locus Tag	PPS_1065
Description	ISPpu15, transposase Orf1

StrainPseudomonas putida S16 GI339488963 Locus TagPPS_4072 DescriptionISPpu15, transposase StrainPseudomonas putida S16 GI339486355 Locus TagPPS_1428 DescriptionISPpu15, transposase Orf1 StrainPseudomonas putida S16 GI339485992 Locus TagPPS_1065 DescriptionISPpu15, transposase Orf1 StrainPseudomonas putida S16 GI339488963 Locus TagPPS_4072 DescriptionISPpu15, transposase StrainPseudomonas putida S16 GI339486355 Locus TagPPS_1428 DescriptionISPpu15, transposase Orf1