Ortholog Set 2992415

Ortholog Set 2992427

Analysis ID	2992415
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992428

Analysis ID	2992427
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992429

Analysis ID	2992428
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992430

Analysis ID	2992429
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992431

Analysis ID	2992430
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992432

Analysis ID	2992431
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992433

Analysis ID	2992432
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992434

Analysis ID	2992433
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992426

Analysis ID	2992434
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992425

Analysis ID	2992426
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992424

Analysis ID	2992425
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992416

Analysis ID	2992424
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992417

Analysis ID	2992416
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992418

Analysis ID	2992417
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992419

Analysis ID	2992418
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992420

Analysis ID	2992419
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992421

Analysis ID	2992420
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992422

Analysis ID	2992421
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992423

Analysis ID	2992422
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 2992435

Analysis ID	2992423
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	2992435
Cluster ID	314
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Ortholuge

Ingroup 1

Strain	Pseudomonas putida S16
GI	339487301
Locus Tag	PPS_2388
Description	putative transposase

StrainPseudomonas putida S16 GI339487301 Locus TagPPS_2388 Descriptionputative transposase StrainPseudomonas putida S16 GI339485120 Locus TagPPS_0181 DescriptionOrfA, transposase StrainPseudomonas putida S16 GI339489472 Locus TagPPS_4589 DescriptionISPsy24, transposase OrfA StrainPseudomonas putida S16 GI339489472 Locus TagPPS_4589 DescriptionISPsy24, transposase OrfA StrainPseudomonas putida S16 GI339487301 Locus TagPPS_2388 Descriptionputative transposase StrainPseudomonas putida S16 GI339485120 Locus TagPPS_0181 DescriptionOrfA, transposase StrainPseudomonas putida S16 GI339489472 Locus TagPPS_4589 DescriptionISPsy24, transposase OrfA StrainPseudomonas putida S16 GI339485120 Locus TagPPS_0181 DescriptionOrfA, transposase StrainPseudomonas putida S16 GI339487301 Locus TagPPS_2388 Descriptionputative transposase StrainPseudomonas putida S16 GI339489472 Locus TagPPS_4589 DescriptionISPsy24, transposase OrfA StrainPseudomonas putida S16 GI339487301 Locus TagPPS_2388 Descriptionputative transposase StrainPseudomonas putida S16 GI339485120 Locus TagPPS_0181 DescriptionOrfA, transposase StrainPseudomonas putida S16 GI339489472 Locus TagPPS_4589 DescriptionISPsy24, transposase OrfA StrainPseudomonas putida S16 GI339489472 Locus TagPPS_4589 DescriptionISPsy24, transposase OrfA StrainPseudomonas putida S16 GI339487301 Locus TagPPS_2388 Descriptionputative transposase StrainPseudomonas putida S16 GI339485120 Locus TagPPS_0181 DescriptionOrfA, transposase StrainPseudomonas putida S16 GI339489472 Locus TagPPS_4589 DescriptionISPsy24, transposase OrfA StrainPseudomonas putida S16 GI339485120 Locus TagPPS_0181 DescriptionOrfA, transposase StrainPseudomonas putida S16 GI339487301 Locus TagPPS_2388 Descriptionputative transposase StrainPseudomonas putida S16 GI339485120 Locus TagPPS_0181 DescriptionOrfA, transposase

Ingroup 2

Strain	Pseudomonas aeruginosa DK2
GI	392986093
Locus Tag	PADK2_23575
Description	hypothetical protein

StrainPseudomonas aeruginosa DK2 GI392983577 Locus TagPADK2_10885 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983121 Locus TagPADK2_08565 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983121 Locus TagPADK2_08565 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985699 Locus TagPADK2_21585 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983121 Locus TagPADK2_08565 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983567 Locus TagPADK2_10835 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984028 Locus TagPADK2_13160 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984028 Locus TagPADK2_13160 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984028 Locus TagPADK2_13160 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983577 Locus TagPADK2_10885 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985362 Locus TagPADK2_19880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985699 Locus TagPADK2_21585 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983567 Locus TagPADK2_10835 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985362 Locus TagPADK2_19880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983567 Locus TagPADK2_10835 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985362 Locus TagPADK2_19880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392986093 Locus TagPADK2_23575 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983577 Locus TagPADK2_10885 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985699 Locus TagPADK2_21585 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392986093 Locus TagPADK2_23575 Descriptionhypothetical protein