Ortholog Set 4112857

Ortholog Set 4112872

Analysis ID	4112857
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112873

Analysis ID	4112872
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112874

Analysis ID	4112873
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112875

Analysis ID	4112874
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112876

Analysis ID	4112875
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112877

Analysis ID	4112876
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112878

Analysis ID	4112877
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112879

Analysis ID	4112878
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112880

Analysis ID	4112879
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112881

Analysis ID	4112880
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112882

Analysis ID	4112881
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112883

Analysis ID	4112882
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112871

Analysis ID	4112883
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112870

Analysis ID	4112871
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112858

Analysis ID	4112870
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112859

Analysis ID	4112858
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112860

Analysis ID	4112859
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112861

Analysis ID	4112860
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112862

Analysis ID	4112861
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112863

Analysis ID	4112862
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112864

Analysis ID	4112863
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112865

Analysis ID	4112864
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112866

Analysis ID	4112865
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112867

Analysis ID	4112866
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112868

Analysis ID	4112867
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112869

Analysis ID	4112868
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4112884

Analysis ID	4112869
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	4112884
Cluster ID	2307
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa DK2
GI	392985361
Locus Tag	PADK2_19875
Description	hypothetical protein

StrainPseudomonas aeruginosa DK2 GI392986092 Locus TagPADK2_23570 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983576 Locus TagPADK2_10880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983568 Locus TagPADK2_10840 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983122 Locus TagPADK2_08570 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983122 Locus TagPADK2_08570 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985361 Locus TagPADK2_19875 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983568 Locus TagPADK2_10840 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985361 Locus TagPADK2_19875 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985698 Locus TagPADK2_21580 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983576 Locus TagPADK2_10880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983122 Locus TagPADK2_08570 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985361 Locus TagPADK2_19875 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985698 Locus TagPADK2_21580 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984027 Locus TagPADK2_13155 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985698 Locus TagPADK2_21580 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392986092 Locus TagPADK2_23570 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983122 Locus TagPADK2_08570 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983568 Locus TagPADK2_10840 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984027 Locus TagPADK2_13155 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984027 Locus TagPADK2_13155 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984027 Locus TagPADK2_13155 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983568 Locus TagPADK2_10840 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392986092 Locus TagPADK2_23570 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983576 Locus TagPADK2_10880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392986092 Locus TagPADK2_23570 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983576 Locus TagPADK2_10880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985698 Locus TagPADK2_21580 Descriptionhypothetical protein

Ingroup 2

Strain	Pseudomonas aeruginosa C3719
GI	254236117
Locus Tag	PACG_02079
Description	hypothetical protein

StrainPseudomonas aeruginosa C3719 GI254237713 Locus TagPACG_03801 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254235426 Locus TagPACG_01333 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa C3719 GI254235658 Locus TagPACG_01592 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254236117 Locus TagPACG_02079 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254235426 Locus TagPACG_01333 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa C3719 GI254237713 Locus TagPACG_03801 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254236117 Locus TagPACG_02079 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254235426 Locus TagPACG_01333 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa C3719 GI254236117 Locus TagPACG_02079 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254235658 Locus TagPACG_01592 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254235658 Locus TagPACG_01592 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254235658 Locus TagPACG_01592 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254235426 Locus TagPACG_01333 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa C3719 GI254235426 Locus TagPACG_01333 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa C3719 GI254235658 Locus TagPACG_01592 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254235426 Locus TagPACG_01333 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa C3719 GI254237713 Locus TagPACG_03801 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254237713 Locus TagPACG_03801 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254235658 Locus TagPACG_01592 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254236117 Locus TagPACG_02079 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254237713 Locus TagPACG_03801 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254235426 Locus TagPACG_01333 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa C3719 GI254236117 Locus TagPACG_02079 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254236117 Locus TagPACG_02079 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254235658 Locus TagPACG_01592 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254237713 Locus TagPACG_03801 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254237713 Locus TagPACG_03801 Descriptionhypothetical protein