Ortholog Set 4095027

Ortholog Set 4095028

Analysis ID	4095027
Cluster ID	3978
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4095036

Analysis ID	4095028
Cluster ID	3978
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4095035

Analysis ID	4095036
Cluster ID	3978
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4095034

Analysis ID	4095035
Cluster ID	3978
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4095033

Analysis ID	4095034
Cluster ID	3978
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	4095033
Cluster ID	3978
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa PAO1
GI	15596175
Locus Tag	PA0978
Description	conserved hypothetical protein

StrainPseudomonas aeruginosa PAO1 GI15596175 Locus TagPA0978 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa PAO1 GI15596175 Locus TagPA0978 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa PAO1 GI15596175 Locus TagPA0978 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa PAO1 GI15596175 Locus TagPA0978 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa PAO1 GI15596175 Locus TagPA0978 Descriptionconserved hypothetical protein

Inparalog 1

Strain	Pseudomonas aeruginosa PAO1
GI	15597134
Locus Tag	PA1938
Description	conserved hypothetical protein

Inparalog 1

Strain	Pseudomonas aeruginosa PAO1
GI	15597134
Locus Tag	PA1938
Description	conserved hypothetical protein

Inparalog 1

Strain	Pseudomonas aeruginosa PAO1
GI	15597134
Locus Tag	PA1938
Description	conserved hypothetical protein

Inparalog 1

Strain	Pseudomonas aeruginosa PAO1
GI	15597134
Locus Tag	PA1938
Description	conserved hypothetical protein

Inparalog 1

Strain	Pseudomonas aeruginosa PAO1
GI	15597134
Locus Tag	PA1938
Description	conserved hypothetical protein

Inparalog 1

Strain	Pseudomonas aeruginosa PAO1
GI	15597134
Locus Tag	PA1938
Description	conserved hypothetical protein

Ingroup 2

Strain	Pseudomonas aeruginosa NCGM2.S1
GI	386069219
Locus Tag	NCGM2_6335
Description	transposase

StrainPseudomonas aeruginosa NCGM2.S1 GI386063016 Locus TagNCGM2_0043 Descriptiontransposase StrainPseudomonas aeruginosa NCGM2.S1 GI386066159 Locus TagNCGM2_3230 Descriptiontransposase StrainPseudomonas aeruginosa NCGM2.S1 GI386068842 Locus TagNCGM2_5951 Descriptiontransposase StrainPseudomonas aeruginosa NCGM2.S1 GI386064965 Locus TagNCGM2_2025 Descriptiontransposase StrainPseudomonas aeruginosa NCGM2.S1 GI386067405 Locus TagNCGM2_4500 Descriptiontransposase