Ortholog Set 4080035

Ortholog Set 4080036

Analysis ID	4080035
Cluster ID	4461
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4080037

Analysis ID	4080036
Cluster ID	4461
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4080038

Analysis ID	4080037
Cluster ID	4461
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4080039

Analysis ID	4080038
Cluster ID	4461
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4080040

Analysis ID	4080039
Cluster ID	4461
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4080041

Analysis ID	4080040
Cluster ID	4461
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	4080041
Cluster ID	4461
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa PAO1
GI	15596175
Locus Tag	PA0978
Description	conserved hypothetical protein

StrainPseudomonas aeruginosa PAO1 GI15596175 Locus TagPA0978 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa PAO1 GI15596175 Locus TagPA0978 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa PAO1 GI15596175 Locus TagPA0978 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa PAO1 GI15596175 Locus TagPA0978 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa PAO1 GI15596175 Locus TagPA0978 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa PAO1 GI15596175 Locus TagPA0978 Descriptionconserved hypothetical protein

Ingroup 2

Strain	Pseudomonas aeruginosa DK2
GI	392983122
Locus Tag	PADK2_08570
Description	hypothetical protein

StrainPseudomonas aeruginosa DK2 GI392986092 Locus TagPADK2_23570 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984027 Locus TagPADK2_13155 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985698 Locus TagPADK2_21580 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985361 Locus TagPADK2_19875 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983576 Locus TagPADK2_10880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983568 Locus TagPADK2_10840 Descriptionhypothetical protein