Ortholog Set 4079451

Ortholog Set 4079452

Analysis ID	4079451
Cluster ID	3885
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4079453

Analysis ID	4079452
Cluster ID	3885
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4079454

Analysis ID	4079453
Cluster ID	3885
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4079455

Analysis ID	4079454
Cluster ID	3885
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4079456

Analysis ID	4079455
Cluster ID	3885
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4079457

Analysis ID	4079456
Cluster ID	3885
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	4079457
Cluster ID	3885
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa PAO1
GI	15596176
Locus Tag	PA0979
Description	conserved hypothetical protein

StrainPseudomonas aeruginosa PAO1 GI15596176 Locus TagPA0979 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa PAO1 GI15596176 Locus TagPA0979 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa PAO1 GI15596176 Locus TagPA0979 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa PAO1 GI15596176 Locus TagPA0979 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa PAO1 GI15596176 Locus TagPA0979 Descriptionconserved hypothetical protein StrainPseudomonas aeruginosa PAO1 GI15596176 Locus TagPA0979 Descriptionconserved hypothetical protein

Ingroup 2

Strain	Pseudomonas aeruginosa DK2
GI	392983577
Locus Tag	PADK2_10885
Description	hypothetical protein

StrainPseudomonas aeruginosa DK2 GI392985362 Locus TagPADK2_19880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983121 Locus TagPADK2_08565 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984028 Locus TagPADK2_13160 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983567 Locus TagPADK2_10835 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392986093 Locus TagPADK2_23575 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985699 Locus TagPADK2_21585 Descriptionhypothetical protein