Ortholog Set 4071087

Ortholog Set 4071095

Analysis ID	4071087
Cluster ID	684
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4071094

Analysis ID	4071095
Cluster ID	684
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4071093

Analysis ID	4071094
Cluster ID	684
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4071092

Analysis ID	4071093
Cluster ID	684
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4071091

Analysis ID	4071092
Cluster ID	684
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4071090

Analysis ID	4071091
Cluster ID	684
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4071089

Analysis ID	4071090
Cluster ID	684
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4071088

Analysis ID	4071089
Cluster ID	684
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4071096

Analysis ID	4071088
Cluster ID	684
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	4071096
Cluster ID	684
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421
GI	330807448
Locus Tag	PSEBR_c2g20
Description	transposase, IS66 family

StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330808911 Locus TagPSEBR_c2g47 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330808911 Locus TagPSEBR_c2g47 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330808911 Locus TagPSEBR_c2g47 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330808911 Locus TagPSEBR_c2g47 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330807448 Locus TagPSEBR_c2g20 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330807448 Locus TagPSEBR_c2g20 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330808911 Locus TagPSEBR_c2g47 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330807448 Locus TagPSEBR_c2g20 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330807448 Locus TagPSEBR_c2g20 Descriptiontransposase, IS66 family

Ingroup 2

Strain	Pseudomonas fluorescens F113
GI	378950188
Locus Tag	PSF113_2270
Description	ISPpu14, transposase Orf2

StrainPseudomonas fluorescens F113 GI378950188 Locus TagPSF113_2270 DescriptionISPpu14, transposase Orf2 StrainPseudomonas fluorescens F113 GI378953076 Locus TagPSF113_5189 DescriptionISPpu14, transposase Orf2 StrainPseudomonas fluorescens F113 GI378950783 Locus TagPSF113_2872 DescriptionISPpu14, transposase Orf2 StrainPseudomonas fluorescens F113 GI378948735 Locus TagPSF113_0796 DescriptionISPpu14, transposase Orf2 StrainPseudomonas fluorescens F113 GI378950783 Locus TagPSF113_2872 DescriptionISPpu14, transposase Orf2 StrainPseudomonas fluorescens F113 GI378953076 Locus TagPSF113_5189 DescriptionISPpu14, transposase Orf2 StrainPseudomonas fluorescens F113 GI378947965 Locus TagPSF113_0023 Descriptionprotein TnpB1 StrainPseudomonas fluorescens F113 GI378947965 Locus TagPSF113_0023 Descriptionprotein TnpB1 StrainPseudomonas fluorescens F113 GI378948735 Locus TagPSF113_0796 DescriptionISPpu14, transposase Orf2