Ortholog Set 4013416

Ortholog Set 4013426

Analysis ID	4013416
Cluster ID	4078
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4013425

Analysis ID	4013426
Cluster ID	4078
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4013424

Analysis ID	4013425
Cluster ID	4078
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4013423

Analysis ID	4013424
Cluster ID	4078
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4013422

Analysis ID	4013423
Cluster ID	4078
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4013421

Analysis ID	4013422
Cluster ID	4078
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4013420

Analysis ID	4013421
Cluster ID	4078
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4013419

Analysis ID	4013420
Cluster ID	4078
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4013418

Analysis ID	4013419
Cluster ID	4078
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4013417

Analysis ID	4013418
Cluster ID	4078
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 4013427

Analysis ID	4013417
Cluster ID	4078
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	4013427
Cluster ID	4078
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa M18
GI	386056327
Locus Tag	PAM18_0258
Description	secreted protein Hcp

StrainPseudomonas aeruginosa M18 GI386061444 Locus TagPAM18_5387 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386056327 Locus TagPAM18_0258 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386061444 Locus TagPAM18_5387 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386056327 Locus TagPAM18_0258 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386059680 Locus TagPAM18_3619 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386059680 Locus TagPAM18_3619 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386059680 Locus TagPAM18_3619 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386061444 Locus TagPAM18_5387 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386061444 Locus TagPAM18_5387 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386056327 Locus TagPAM18_0258 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386059680 Locus TagPAM18_3619 Descriptionsecreted protein Hcp

Ingroup 2

Strain	Pseudomonas aeruginosa NCGM2.S1
GI	386068921
Locus Tag	NCGM2_6030
Description	secreted protein

StrainPseudomonas aeruginosa NCGM2.S1 GI386065336 Locus TagNCGM2_2397 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386065492 Locus TagNCGM2_2553 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386065492 Locus TagNCGM2_2553 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386065336 Locus TagNCGM2_2397 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386065336 Locus TagNCGM2_2397 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386068921 Locus TagNCGM2_6030 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386065492 Locus TagNCGM2_2553 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386063243 Locus TagNCGM2_0270 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386068921 Locus TagNCGM2_6030 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386063243 Locus TagNCGM2_0270 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386063243 Locus TagNCGM2_0270 Descriptionsecreted protein