Ortholog Set 3966944

Ortholog Set 3966940

Analysis ID	3966944
Cluster ID	222
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3966951

Analysis ID	3966940
Cluster ID	222
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3966942

Analysis ID	3966951
Cluster ID	222
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3966943

Analysis ID	3966942
Cluster ID	222
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3966947

Analysis ID	3966943
Cluster ID	222
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3966945

Analysis ID	3966947
Cluster ID	222
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3966945
Cluster ID	222
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa DK2
GI	392983567
Locus Tag	PADK2_10835
Description	hypothetical protein

StrainPseudomonas aeruginosa DK2 GI392985362 Locus TagPADK2_19880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983577 Locus TagPADK2_10885 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392986093 Locus TagPADK2_23575 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984028 Locus TagPADK2_13160 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985699 Locus TagPADK2_21585 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983121 Locus TagPADK2_08565 Descriptionhypothetical protein

Ingroup 2

Strain	Pseudomonas aeruginosa B136-33
GI	478478453
Locus Tag	G655_11285
Description	transposase

StrainPseudomonas aeruginosa B136-33 GI478478453 Locus TagG655_11285 Descriptiontransposase StrainPseudomonas aeruginosa B136-33 GI478478453 Locus TagG655_11285 Descriptiontransposase StrainPseudomonas aeruginosa B136-33 GI478478453 Locus TagG655_11285 Descriptiontransposase StrainPseudomonas aeruginosa B136-33 GI478478453 Locus TagG655_11285 Descriptiontransposase StrainPseudomonas aeruginosa B136-33 GI478478453 Locus TagG655_11285 Descriptiontransposase StrainPseudomonas aeruginosa B136-33 GI478478453 Locus TagG655_11285 Descriptiontransposase

Inparalogs to Ingroup 2

Strain	Pseudomonas aeruginosa B136-33
GI	478481240
Locus Tag	G655_25305
Description	transposase

Strain	Pseudomonas aeruginosa B136-33
GI	478481240
Locus Tag	G655_25305
Description	transposase

Strain	Pseudomonas aeruginosa B136-33
GI	478481240
Locus Tag	G655_25305
Description	transposase

Strain	Pseudomonas aeruginosa B136-33
GI	478481240
Locus Tag	G655_25305
Description	transposase

Strain	Pseudomonas aeruginosa B136-33
GI	478481240
Locus Tag	G655_25305
Description	transposase

Strain	Pseudomonas aeruginosa B136-33
GI	478481240
Locus Tag	G655_25305
Description	transposase

Strain	Pseudomonas aeruginosa B136-33
GI	478481240
Locus Tag	G655_25305
Description	transposase