Ortholog Set 3946815

Ortholog Set 3946816

Analysis ID	3946815
Cluster ID	1523
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3946817

Analysis ID	3946816
Cluster ID	1523
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3946818

Analysis ID	3946817
Cluster ID	1523
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3946819

Analysis ID	3946818
Cluster ID	1523
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3946820

Analysis ID	3946819
Cluster ID	1523
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3946821

Analysis ID	3946820
Cluster ID	1523
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3946822

Analysis ID	3946821
Cluster ID	1523
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3946822
Cluster ID	1523
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa UCBPP-PA14
GI	116053976
Locus Tag	PA14_03240
Description	secreted protein Hcp

StrainPseudomonas aeruginosa UCBPP-PA14 GI116049604 Locus TagPA14_43070 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116053976 Locus TagPA14_03240 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116053416 Locus TagPA14_69560 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116049456 Locus TagPA14_44890 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116049604 Locus TagPA14_43070 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116049456 Locus TagPA14_44890 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116053416 Locus TagPA14_69560 Descriptionsecreted protein Hcp

Ingroup 2

Strain	Pseudomonas aeruginosa C3719
GI	254237500
Locus Tag	PACG_03579
Description	secreted protein Hcp

StrainPseudomonas aeruginosa C3719 GI254237500 Locus TagPACG_03579 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa C3719 GI254234608 Locus TagPACG_00471 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa C3719 GI254237500 Locus TagPACG_03579 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa C3719 GI254234608 Locus TagPACG_00471 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa C3719 GI254234608 Locus TagPACG_00471 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa C3719 GI254237500 Locus TagPACG_03579 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa C3719 GI254234608 Locus TagPACG_00471 Descriptionsecreted protein Hcp