Ortholog Set 3945289

Ortholog Set 3945299

Analysis ID	3945289
Cluster ID	14
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3945298

Analysis ID	3945299
Cluster ID	14
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3945297

Analysis ID	3945298
Cluster ID	14
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3945296

Analysis ID	3945297
Cluster ID	14
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3945295

Analysis ID	3945296
Cluster ID	14
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3945294

Analysis ID	3945295
Cluster ID	14
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3945293

Analysis ID	3945294
Cluster ID	14
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3945292

Analysis ID	3945293
Cluster ID	14
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3945291

Analysis ID	3945292
Cluster ID	14
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3945290

Analysis ID	3945291
Cluster ID	14
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3945300

Analysis ID	3945290
Cluster ID	14
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3945300
Cluster ID	14
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa UCBPP-PA14
GI	116048905
Locus Tag	PA14_51620
Description	transposase

StrainPseudomonas aeruginosa UCBPP-PA14 GI116048905 Locus TagPA14_51620 Descriptiontransposase StrainPseudomonas aeruginosa UCBPP-PA14 GI116053979 Locus TagPA14_03290 Descriptionhypothetical protein StrainPseudomonas aeruginosa UCBPP-PA14 GI116053979 Locus TagPA14_03290 Descriptionhypothetical protein StrainPseudomonas aeruginosa UCBPP-PA14 GI116048905 Locus TagPA14_51620 Descriptiontransposase StrainPseudomonas aeruginosa UCBPP-PA14 GI116048905 Locus TagPA14_51620 Descriptiontransposase StrainPseudomonas aeruginosa UCBPP-PA14 GI116053979 Locus TagPA14_03290 Descriptionhypothetical protein StrainPseudomonas aeruginosa UCBPP-PA14 GI116048905 Locus TagPA14_51620 Descriptiontransposase StrainPseudomonas aeruginosa UCBPP-PA14 GI116053979 Locus TagPA14_03290 Descriptionhypothetical protein StrainPseudomonas aeruginosa UCBPP-PA14 GI116053979 Locus TagPA14_03290 Descriptionhypothetical protein StrainPseudomonas aeruginosa UCBPP-PA14 GI116048905 Locus TagPA14_51620 Descriptiontransposase StrainPseudomonas aeruginosa UCBPP-PA14 GI116053979 Locus TagPA14_03290 Descriptionhypothetical protein

Ingroup 2

Strain	Pseudomonas aeruginosa C3719
GI	254236118
Locus Tag	PACG_02080
Description	transposase insN for insertion sequence element IS911B

StrainPseudomonas aeruginosa C3719 GI254237714 Locus TagPACG_03802 Descriptiontransposase insN for insertion sequence element IS911B StrainPseudomonas aeruginosa C3719 GI254235425 Locus TagPACG_01332 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254234627 Locus TagPACG_00491 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254235659 Locus TagPACG_01593 Descriptiontransposase insN for insertion sequence element IS911B StrainPseudomonas aeruginosa C3719 GI254235425 Locus TagPACG_01332 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254237714 Locus TagPACG_03802 Descriptiontransposase insN for insertion sequence element IS911B StrainPseudomonas aeruginosa C3719 GI254234627 Locus TagPACG_00491 Descriptionhypothetical protein StrainPseudomonas aeruginosa C3719 GI254236118 Locus TagPACG_02080 Descriptiontransposase insN for insertion sequence element IS911B StrainPseudomonas aeruginosa C3719 GI254239176 Locus TagPACG_05367 Descriptiontransposase insN for insertion sequence element IS911B StrainPseudomonas aeruginosa C3719 GI254239176 Locus TagPACG_05367 Descriptiontransposase insN for insertion sequence element IS911B StrainPseudomonas aeruginosa C3719 GI254235659 Locus TagPACG_01593 Descriptiontransposase insN for insertion sequence element IS911B