Ortholog Set 3936433

Ortholog Set 3936443

Analysis ID	3936433
Cluster ID	2017
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3936442

Analysis ID	3936443
Cluster ID	2017
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3936441

Analysis ID	3936442
Cluster ID	2017
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3936440

Analysis ID	3936441
Cluster ID	2017
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3936439

Analysis ID	3936440
Cluster ID	2017
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3936438

Analysis ID	3936439
Cluster ID	2017
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3936437

Analysis ID	3936438
Cluster ID	2017
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3936436

Analysis ID	3936437
Cluster ID	2017
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3936435

Analysis ID	3936436
Cluster ID	2017
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3936434

Analysis ID	3936435
Cluster ID	2017
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3936444

Analysis ID	3936434
Cluster ID	2017
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3936444
Cluster ID	2017
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa UCBPP-PA14
GI	116053976
Locus Tag	PA14_03240
Description	secreted protein Hcp

StrainPseudomonas aeruginosa UCBPP-PA14 GI116053976 Locus TagPA14_03240 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116053416 Locus TagPA14_69560 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116053416 Locus TagPA14_69560 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116053416 Locus TagPA14_69560 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116049456 Locus TagPA14_44890 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116053976 Locus TagPA14_03240 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116049456 Locus TagPA14_44890 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116049604 Locus TagPA14_43070 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116049604 Locus TagPA14_43070 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116049456 Locus TagPA14_44890 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116049604 Locus TagPA14_43070 Descriptionsecreted protein Hcp

Ingroup 2

Strain	Pseudomonas aeruginosa DK2
GI	392985022
Locus Tag	PADK2_18160
Description	secreted protein Hcp

StrainPseudomonas aeruginosa DK2 GI392986949 Locus TagPADK2_27865 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392986949 Locus TagPADK2_27865 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392985022 Locus TagPADK2_18160 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392981672 Locus TagPADK2_01310 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392985022 Locus TagPADK2_18160 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392981672 Locus TagPADK2_01310 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392986949 Locus TagPADK2_27865 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392981672 Locus TagPADK2_01310 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392985022 Locus TagPADK2_18160 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392981672 Locus TagPADK2_01310 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392986949 Locus TagPADK2_27865 Descriptionsecreted protein Hcp