Ortholog Set 3936217

Ortholog Set 3936218

Analysis ID	3936217
Cluster ID	1814
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3936219

Analysis ID	3936218
Cluster ID	1814
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3936220

Analysis ID	3936219
Cluster ID	1814
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3936221

Analysis ID	3936220
Cluster ID	1814
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3936222

Analysis ID	3936221
Cluster ID	1814
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3936228

Analysis ID	3936222
Cluster ID	1814
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3936228
Cluster ID	1814
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa UCBPP-PA14
GI	116048904
Locus Tag	PA14_51630
Description	transposase

StrainPseudomonas aeruginosa UCBPP-PA14 GI116048904 Locus TagPA14_51630 Descriptiontransposase StrainPseudomonas aeruginosa UCBPP-PA14 GI116048904 Locus TagPA14_51630 Descriptiontransposase StrainPseudomonas aeruginosa UCBPP-PA14 GI116048904 Locus TagPA14_51630 Descriptiontransposase StrainPseudomonas aeruginosa UCBPP-PA14 GI116048904 Locus TagPA14_51630 Descriptiontransposase StrainPseudomonas aeruginosa UCBPP-PA14 GI116048904 Locus TagPA14_51630 Descriptiontransposase StrainPseudomonas aeruginosa UCBPP-PA14 GI116048904 Locus TagPA14_51630 Descriptiontransposase

Inparalog 1

Strain	Pseudomonas aeruginosa UCBPP-PA14
GI	116053980
Locus Tag	PA14_03300
Description	hypothetical protein

Inparalog 1

Strain	Pseudomonas aeruginosa UCBPP-PA14
GI	116053980
Locus Tag	PA14_03300
Description	hypothetical protein

Inparalog 1

Strain	Pseudomonas aeruginosa UCBPP-PA14
GI	116053980
Locus Tag	PA14_03300
Description	hypothetical protein

Inparalog 1

Strain	Pseudomonas aeruginosa UCBPP-PA14
GI	116053980
Locus Tag	PA14_03300
Description	hypothetical protein

Inparalog 1

Strain	Pseudomonas aeruginosa UCBPP-PA14
GI	116053980
Locus Tag	PA14_03300
Description	hypothetical protein

Inparalog 1

Strain	Pseudomonas aeruginosa UCBPP-PA14
GI	116053980
Locus Tag	PA14_03300
Description	hypothetical protein

Inparalog 1

Strain	Pseudomonas aeruginosa UCBPP-PA14
GI	116053980
Locus Tag	PA14_03300
Description	hypothetical protein

Ingroup 2

Strain	Pseudomonas aeruginosa DK2
GI	392983568
Locus Tag	PADK2_10840
Description	hypothetical protein

StrainPseudomonas aeruginosa DK2 GI392983576 Locus TagPADK2_10880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985698 Locus TagPADK2_21580 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392986092 Locus TagPADK2_23570 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984027 Locus TagPADK2_13155 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985361 Locus TagPADK2_19875 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983122 Locus TagPADK2_08570 Descriptionhypothetical protein