Ortholog Set 3918386

Ortholog Set 3918396

Analysis ID	3918386
Cluster ID	344
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3918395

Analysis ID	3918396
Cluster ID	344
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3918394

Analysis ID	3918395
Cluster ID	344
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3918393

Analysis ID	3918394
Cluster ID	344
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3918392

Analysis ID	3918393
Cluster ID	344
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3918391

Analysis ID	3918392
Cluster ID	344
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3918390

Analysis ID	3918391
Cluster ID	344
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3918389

Analysis ID	3918390
Cluster ID	344
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3918388

Analysis ID	3918389
Cluster ID	344
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3918387

Analysis ID	3918388
Cluster ID	344
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3918397

Analysis ID	3918387
Cluster ID	344
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3918397
Cluster ID	344
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa UCBPP-PA14
GI	116053416
Locus Tag	PA14_69560
Description	secreted protein Hcp

StrainPseudomonas aeruginosa UCBPP-PA14 GI116053416 Locus TagPA14_69560 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116049456 Locus TagPA14_44890 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116049604 Locus TagPA14_43070 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116049456 Locus TagPA14_44890 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116053976 Locus TagPA14_03240 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116053976 Locus TagPA14_03240 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116049456 Locus TagPA14_44890 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116049604 Locus TagPA14_43070 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116049604 Locus TagPA14_43070 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116053976 Locus TagPA14_03240 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa UCBPP-PA14 GI116053416 Locus TagPA14_69560 Descriptionsecreted protein Hcp

Ingroup 2

Strain	Pseudomonas aeruginosa B136-33
GI	478479571
Locus Tag	G655_16910
Description	secreted protein Hcp

StrainPseudomonas aeruginosa B136-33 GI478481724 Locus TagG655_27725 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa B136-33 GI478479721 Locus TagG655_17660 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa B136-33 GI478481724 Locus TagG655_27725 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa B136-33 GI478481724 Locus TagG655_27725 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa B136-33 GI478479571 Locus TagG655_16910 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa B136-33 GI478479721 Locus TagG655_17660 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa B136-33 GI478479571 Locus TagG655_16910 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa B136-33 GI478479571 Locus TagG655_16910 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa B136-33 GI478479721 Locus TagG655_17660 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa B136-33 GI478481724 Locus TagG655_27725 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa B136-33 GI478479721 Locus TagG655_17660 Descriptionsecreted protein Hcp