Ortholog Set 3912559

Ortholog Set 3912572

Analysis ID	3912559
Cluster ID	3098
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3912571

Analysis ID	3912572
Cluster ID	3098
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3912570

Analysis ID	3912571
Cluster ID	3098
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3912569

Analysis ID	3912570
Cluster ID	3098
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3912568

Analysis ID	3912569
Cluster ID	3098
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3912566

Analysis ID	3912568
Cluster ID	3098
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3912565

Analysis ID	3912566
Cluster ID	3098
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3912564

Analysis ID	3912565
Cluster ID	3098
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3912563

Analysis ID	3912564
Cluster ID	3098
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3912561

Analysis ID	3912563
Cluster ID	3098
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3912573

Analysis ID	3912561
Cluster ID	3098
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3912573
Cluster ID	3098
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas syringae pv. syringae B728a
GI	66044240
Locus Tag	Psyr_0987
Description	helix-turn-helix, Fis-type

StrainPseudomonas syringae pv. syringae B728a GI66043918 Locus TagPsyr_0651 Descriptionhelix-turn-helix, Fis-type StrainPseudomonas syringae pv. syringae B728a GI66047834 Locus TagPsyr_4607 Descriptionhelix-turn-helix, Fis-type StrainPseudomonas syringae pv. syringae B728a GI66047834 Locus TagPsyr_4607 Descriptionhelix-turn-helix, Fis-type StrainPseudomonas syringae pv. syringae B728a GI66043918 Locus TagPsyr_0651 Descriptionhelix-turn-helix, Fis-type StrainPseudomonas syringae pv. syringae B728a GI66043918 Locus TagPsyr_0651 Descriptionhelix-turn-helix, Fis-type StrainPseudomonas syringae pv. syringae B728a GI66047834 Locus TagPsyr_4607 Descriptionhelix-turn-helix, Fis-type StrainPseudomonas syringae pv. syringae B728a GI66044240 Locus TagPsyr_0987 Descriptionhelix-turn-helix, Fis-type StrainPseudomonas syringae pv. syringae B728a GI66044240 Locus TagPsyr_0987 Descriptionhelix-turn-helix, Fis-type StrainPseudomonas syringae pv. syringae B728a GI66044240 Locus TagPsyr_0987 Descriptionhelix-turn-helix, Fis-type StrainPseudomonas syringae pv. syringae B728a GI66047834 Locus TagPsyr_4607 Descriptionhelix-turn-helix, Fis-type StrainPseudomonas syringae pv. syringae B728a GI66043918 Locus TagPsyr_0651 Descriptionhelix-turn-helix, Fis-type

Ingroup 2

Strain	Pseudomonas syringae pv. phaseolicola 1448A
GI	71734005
Locus Tag	PSPPH_3500
Description	ISPsy24, transposase orfA

StrainPseudomonas syringae pv. phaseolicola 1448A GI71734005 Locus TagPSPPH_3500 DescriptionISPsy24, transposase orfA StrainPseudomonas syringae pv. phaseolicola 1448A GI71736129 Locus TagPSPPH_2797 DescriptionISPsy24, transposase orfA StrainPseudomonas syringae pv. phaseolicola 1448A GI71734664 Locus TagPSPPH_3740 DescriptionISPsy24, transposase orfA StrainPseudomonas syringae pv. phaseolicola 1448A GI71736129 Locus TagPSPPH_2797 DescriptionISPsy24, transposase orfA StrainPseudomonas syringae pv. phaseolicola 1448A GI71736749 Locus TagPSPPH_1844 DescriptionISPsy24, transposase orfA StrainPseudomonas syringae pv. phaseolicola 1448A GI71736749 Locus TagPSPPH_1844 DescriptionISPsy24, transposase orfA StrainPseudomonas syringae pv. phaseolicola 1448A GI71734664 Locus TagPSPPH_3740 DescriptionISPsy24, transposase orfA StrainPseudomonas syringae pv. phaseolicola 1448A GI71736129 Locus TagPSPPH_2797 DescriptionISPsy24, transposase orfA StrainPseudomonas syringae pv. phaseolicola 1448A GI71736749 Locus TagPSPPH_1844 DescriptionISPsy24, transposase orfA StrainPseudomonas syringae pv. phaseolicola 1448A GI71734005 Locus TagPSPPH_3500 DescriptionISPsy24, transposase orfA StrainPseudomonas syringae pv. phaseolicola 1448A GI71734664 Locus TagPSPPH_3740 DescriptionISPsy24, transposase orfA

Inparalogs to Ingroup 2

Strain	Pseudomonas syringae pv. phaseolicola 1448A
GI	71725148
Locus Tag	PSPPH_A0114
Description	transposase family protein

Strain	Pseudomonas syringae pv. phaseolicola 1448A
GI	71725148
Locus Tag	PSPPH_A0114
Description	transposase family protein

Strain	Pseudomonas syringae pv. phaseolicola 1448A
GI	71725148
Locus Tag	PSPPH_A0114
Description	transposase family protein