Ortholog Set 3885894

Ortholog Set 3885895

Analysis ID	3885894
Cluster ID	1751
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3885896

Analysis ID	3885895
Cluster ID	1751
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3885897

Analysis ID	3885896
Cluster ID	1751
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3885898

Analysis ID	3885897
Cluster ID	1751
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3885899

Analysis ID	3885898
Cluster ID	1751
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3885900

Analysis ID	3885899
Cluster ID	1751
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3885901

Analysis ID	3885900
Cluster ID	1751
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3885902

Analysis ID	3885901
Cluster ID	1751
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3885902
Cluster ID	1751
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa DK2
GI	392986949
Locus Tag	PADK2_27865
Description	secreted protein Hcp

StrainPseudomonas aeruginosa DK2 GI392986949 Locus TagPADK2_27865 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392981672 Locus TagPADK2_01310 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392981672 Locus TagPADK2_01310 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392985022 Locus TagPADK2_18160 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392985022 Locus TagPADK2_18160 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392985022 Locus TagPADK2_18160 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392981672 Locus TagPADK2_01310 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa DK2 GI392986949 Locus TagPADK2_27865 Descriptionsecreted protein Hcp

Ingroup 2

Strain	Pseudomonas aeruginosa RP73
GI	514413382
Locus Tag	M062_27760
Description	hypothetical protein

StrainPseudomonas aeruginosa RP73 GI514412689 Locus TagM062_01295 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412689 Locus TagM062_01295 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412925 Locus TagM062_08085 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412925 Locus TagM062_08085 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412689 Locus TagM062_01295 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514413382 Locus TagM062_27760 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514413382 Locus TagM062_27760 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412925 Locus TagM062_08085 Descriptionhypothetical protein