Ortholog Set 3874773

Ortholog Set 3874774

Analysis ID	3874773
Cluster ID	1376
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3874775

Analysis ID	3874774
Cluster ID	1376
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3874776

Analysis ID	3874775
Cluster ID	1376
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3874777

Analysis ID	3874776
Cluster ID	1376
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3874778

Analysis ID	3874777
Cluster ID	1376
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3874779

Analysis ID	3874778
Cluster ID	1376
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3874780

Analysis ID	3874779
Cluster ID	1376
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3874781

Analysis ID	3874780
Cluster ID	1376
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3874781
Cluster ID	1376
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa M18
GI	386059680
Locus Tag	PAM18_3619
Description	secreted protein Hcp

StrainPseudomonas aeruginosa M18 GI386059680 Locus TagPAM18_3619 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386061444 Locus TagPAM18_5387 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386056327 Locus TagPAM18_0258 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386056327 Locus TagPAM18_0258 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386061444 Locus TagPAM18_5387 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386056327 Locus TagPAM18_0258 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386061444 Locus TagPAM18_5387 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386059680 Locus TagPAM18_3619 Descriptionsecreted protein Hcp

Ingroup 2

Strain	Pseudomonas aeruginosa RP73
GI	514412689
Locus Tag	M062_01295
Description	hypothetical protein

StrainPseudomonas aeruginosa RP73 GI514413382 Locus TagM062_27760 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514413382 Locus TagM062_27760 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514413382 Locus TagM062_27760 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412925 Locus TagM062_08085 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412689 Locus TagM062_01295 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412689 Locus TagM062_01295 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412925 Locus TagM062_08085 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412925 Locus TagM062_08085 Descriptionhypothetical protein