Ortholog Set 1469425

Ortholog Set 1469438

Analysis ID	1469425
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469457

Analysis ID	1469438
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469443

Analysis ID	1469457
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469445

Analysis ID	1469443
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469446

Analysis ID	1469445
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469448

Analysis ID	1469446
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469450

Analysis ID	1469448
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469452

Analysis ID	1469450
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469455

Analysis ID	1469452
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469437

Analysis ID	1469455
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469436

Analysis ID	1469437
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469435

Analysis ID	1469436
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469429

Analysis ID	1469435
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469427

Analysis ID	1469429
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469431

Analysis ID	1469427
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469428

Analysis ID	1469431
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 1469433

Analysis ID	1469428
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	1469433
Cluster ID	1140
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Ortholuge

Ingroup 1

Strain	Pseudomonas mendocina ymp
GI	146305473
Locus Tag	Pmen_0434
Description	transposase IS66

StrainPseudomonas mendocina ymp GI146305473 Locus TagPmen_0434 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146308105 Locus TagPmen_3084 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146308105 Locus TagPmen_3084 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146306196 Locus TagPmen_1163 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146307016 Locus TagPmen_1988 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146307016 Locus TagPmen_1988 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146305470 Locus TagPmen_0431 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146309128 Locus TagPmen_4114 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146305470 Locus TagPmen_0431 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146308653 Locus TagPmen_3638 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146306196 Locus TagPmen_1163 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146306084 Locus TagPmen_1050 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146306579 Locus TagPmen_1548 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146306579 Locus TagPmen_1548 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146308653 Locus TagPmen_3638 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146306084 Locus TagPmen_1050 Descriptiontransposase IS66 StrainPseudomonas mendocina ymp GI146309128 Locus TagPmen_4114 Descriptiontransposase IS66

Inparalog 1

Strain	Pseudomonas mendocina ymp
GI	146305077
Locus Tag	Pmen_0036
Description	transposase IS66

Inparalog 1

Strain	Pseudomonas mendocina ymp
GI	146305201
Locus Tag	Pmen_0160
Description	transposase IS66

Inparalog 1

Strain	Pseudomonas mendocina ymp
GI	146305077
Locus Tag	Pmen_0036
Description	transposase IS66

Inparalog 1

Strain	Pseudomonas mendocina ymp
GI	146305201
Locus Tag	Pmen_0160
Description	transposase IS66

Ingroup 2

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421
GI	330807447
Locus Tag	PSEBR_a745
Description	transposase family IS66

StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330808912 Locus TagPSEBR_a2108 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330807447 Locus TagPSEBR_a745 Descriptiontransposase family IS66 StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330808912 Locus TagPSEBR_a2108 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330808912 Locus TagPSEBR_a2108 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330807447 Locus TagPSEBR_a745 Descriptiontransposase family IS66 StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330808912 Locus TagPSEBR_a2108 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330807447 Locus TagPSEBR_a745 Descriptiontransposase family IS66 StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330808912 Locus TagPSEBR_a2108 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330808912 Locus TagPSEBR_a2108 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330807447 Locus TagPSEBR_a745 Descriptiontransposase family IS66 StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330807447 Locus TagPSEBR_a745 Descriptiontransposase family IS66 StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330808912 Locus TagPSEBR_a2108 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330807447 Locus TagPSEBR_a745 Descriptiontransposase family IS66 StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330808912 Locus TagPSEBR_a2108 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330808912 Locus TagPSEBR_a2108 Descriptiontransposase, IS66 family StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330807447 Locus TagPSEBR_a745 Descriptiontransposase family IS66 StrainPseudomonas brassicacearum subsp. brassicacearum NFM421 GI330807447 Locus TagPSEBR_a745 Descriptiontransposase family IS66

Inparalogs to Ingroup 2

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421
GI	330810690
Locus Tag	PSEBR_a3785
Description	transposase, IS66 family

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421
GI	330810690
Locus Tag	PSEBR_a3785
Description	transposase, IS66 family

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421
GI	330810690
Locus Tag	PSEBR_a3785
Description	transposase, IS66 family

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421
GI	330810690
Locus Tag	PSEBR_a3785
Description	transposase, IS66 family

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421
GI	330810690
Locus Tag	PSEBR_a3785
Description	transposase, IS66 family

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421
GI	330810690
Locus Tag	PSEBR_a3785
Description	transposase, IS66 family

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421
GI	330810690
Locus Tag	PSEBR_a3785
Description	transposase, IS66 family

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421
GI	330810690
Locus Tag	PSEBR_a3785
Description	transposase, IS66 family

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421
GI	330810690
Locus Tag	PSEBR_a3785
Description	transposase, IS66 family