Ortholog Set 3741674

Ortholog Set 3741673

Analysis ID	3741674
Cluster ID	1530
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3741678

Analysis ID	3741673
Cluster ID	1530
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3741671

Analysis ID	3741678
Cluster ID	1530
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3741670

Analysis ID	3741671
Cluster ID	1530
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3741680

Analysis ID	3741670
Cluster ID	1530
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3741681

Analysis ID	3741680
Cluster ID	1530
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3741681
Cluster ID	1530
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa DK2
GI	392986092
Locus Tag	PADK2_23570
Description	hypothetical protein

StrainPseudomonas aeruginosa DK2 GI392983568 Locus TagPADK2_10840 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985698 Locus TagPADK2_21580 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985361 Locus TagPADK2_19875 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983122 Locus TagPADK2_08570 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983576 Locus TagPADK2_10880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984027 Locus TagPADK2_13155 Descriptionhypothetical protein

Ingroup 2

Strain	Pseudomonas aeruginosa 2192
GI	254243928
Locus Tag	PA2G_04758
Description	transposase insM for insertion sequence element IS600

StrainPseudomonas aeruginosa 2192 GI254243928 Locus TagPA2G_04758 Descriptiontransposase insM for insertion sequence element IS600 StrainPseudomonas aeruginosa 2192 GI254243928 Locus TagPA2G_04758 Descriptiontransposase insM for insertion sequence element IS600 StrainPseudomonas aeruginosa 2192 GI254243928 Locus TagPA2G_04758 Descriptiontransposase insM for insertion sequence element IS600 StrainPseudomonas aeruginosa 2192 GI254243928 Locus TagPA2G_04758 Descriptiontransposase insM for insertion sequence element IS600 StrainPseudomonas aeruginosa 2192 GI254243928 Locus TagPA2G_04758 Descriptiontransposase insM for insertion sequence element IS600 StrainPseudomonas aeruginosa 2192 GI254243928 Locus TagPA2G_04758 Descriptiontransposase insM for insertion sequence element IS600

Inparalogs to Ingroup 2

Strain	Pseudomonas aeruginosa 2192
GI	254240351
Locus Tag	PA2G_00998
Description	conserved hypothetical protein

Strain	Pseudomonas aeruginosa 2192
GI	254243667
Locus Tag	PA2G_04493
Description	transposase insM for insertion sequence element IS600

Strain	Pseudomonas aeruginosa 2192
GI	254243667
Locus Tag	PA2G_04493
Description	transposase insM for insertion sequence element IS600

Strain	Pseudomonas aeruginosa 2192
GI	254240351
Locus Tag	PA2G_00998
Description	conserved hypothetical protein

Strain	Pseudomonas aeruginosa 2192
GI	254240351
Locus Tag	PA2G_00998
Description	conserved hypothetical protein

Strain	Pseudomonas aeruginosa 2192
GI	254243667
Locus Tag	PA2G_04493
Description	transposase insM for insertion sequence element IS600

Strain	Pseudomonas aeruginosa 2192
GI	254243667
Locus Tag	PA2G_04493
Description	transposase insM for insertion sequence element IS600

Strain	Pseudomonas aeruginosa 2192
GI	254240351
Locus Tag	PA2G_00998
Description	conserved hypothetical protein

Strain	Pseudomonas aeruginosa 2192
GI	254240351
Locus Tag	PA2G_00998
Description	conserved hypothetical protein

Strain	Pseudomonas aeruginosa 2192
GI	254243667
Locus Tag	PA2G_04493
Description	transposase insM for insertion sequence element IS600

Strain	Pseudomonas aeruginosa 2192
GI	254243667
Locus Tag	PA2G_04493
Description	transposase insM for insertion sequence element IS600

Strain	Pseudomonas aeruginosa 2192
GI	254240351
Locus Tag	PA2G_00998
Description	conserved hypothetical protein

Strain	Pseudomonas aeruginosa 2192
GI	254240351
Locus Tag	PA2G_00998
Description	conserved hypothetical protein

Strain	Pseudomonas aeruginosa 2192
GI	254243667
Locus Tag	PA2G_04493
Description	transposase insM for insertion sequence element IS600