Ortholog Set 3740241

Ortholog Set 3740253

Analysis ID	3740241
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740254

Analysis ID	3740253
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740255

Analysis ID	3740254
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740256

Analysis ID	3740255
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740257

Analysis ID	3740256
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740258

Analysis ID	3740257
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740259

Analysis ID	3740258
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740260

Analysis ID	3740259
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740252

Analysis ID	3740260
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740251

Analysis ID	3740252
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740250

Analysis ID	3740251
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740242

Analysis ID	3740250
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740243

Analysis ID	3740242
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740244

Analysis ID	3740243
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740245

Analysis ID	3740244
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740246

Analysis ID	3740245
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740247

Analysis ID	3740246
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740248

Analysis ID	3740247
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740249

Analysis ID	3740248
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3740261

Analysis ID	3740249
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3740261
Cluster ID	141
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa DK2
GI	392986093
Locus Tag	PADK2_23575
Description	hypothetical protein

StrainPseudomonas aeruginosa DK2 GI392984028 Locus TagPADK2_13160 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984028 Locus TagPADK2_13160 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983567 Locus TagPADK2_10835 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985699 Locus TagPADK2_21585 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983577 Locus TagPADK2_10885 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985362 Locus TagPADK2_19880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985699 Locus TagPADK2_21585 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985362 Locus TagPADK2_19880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392986093 Locus TagPADK2_23575 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985362 Locus TagPADK2_19880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983121 Locus TagPADK2_08565 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984028 Locus TagPADK2_13160 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985699 Locus TagPADK2_21585 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392986093 Locus TagPADK2_23575 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983567 Locus TagPADK2_10835 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983567 Locus TagPADK2_10835 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983577 Locus TagPADK2_10885 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983121 Locus TagPADK2_08565 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983121 Locus TagPADK2_08565 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983577 Locus TagPADK2_10885 Descriptionhypothetical protein

Ingroup 2

Strain	Pseudomonas aeruginosa 2192
GI	254243668
Locus Tag	PA2G_04494
Description	transposase insN for insertion sequence element IS911

StrainPseudomonas aeruginosa 2192 GI254243668 Locus TagPA2G_04494 Descriptiontransposase insN for insertion sequence element IS911 StrainPseudomonas aeruginosa 2192 GI254243927 Locus TagPA2G_04757 Descriptiontransposase insN for insertion sequence element IS911 StrainPseudomonas aeruginosa 2192 GI254243927 Locus TagPA2G_04757 Descriptiontransposase insN for insertion sequence element IS911 StrainPseudomonas aeruginosa 2192 GI254243927 Locus TagPA2G_04757 Descriptiontransposase insN for insertion sequence element IS911 StrainPseudomonas aeruginosa 2192 GI254240350 Locus TagPA2G_00997 Descriptionhypothetical protein StrainPseudomonas aeruginosa 2192 GI254243668 Locus TagPA2G_04494 Descriptiontransposase insN for insertion sequence element IS911 StrainPseudomonas aeruginosa 2192 GI254240350 Locus TagPA2G_00997 Descriptionhypothetical protein StrainPseudomonas aeruginosa 2192 GI254240350 Locus TagPA2G_00997 Descriptionhypothetical protein StrainPseudomonas aeruginosa 2192 GI254240350 Locus TagPA2G_00997 Descriptionhypothetical protein StrainPseudomonas aeruginosa 2192 GI254243927 Locus TagPA2G_04757 Descriptiontransposase insN for insertion sequence element IS911 StrainPseudomonas aeruginosa 2192 GI254243668 Locus TagPA2G_04494 Descriptiontransposase insN for insertion sequence element IS911 StrainPseudomonas aeruginosa 2192 GI254240350 Locus TagPA2G_00997 Descriptionhypothetical protein StrainPseudomonas aeruginosa 2192 GI254243668 Locus TagPA2G_04494 Descriptiontransposase insN for insertion sequence element IS911 StrainPseudomonas aeruginosa 2192 GI254243927 Locus TagPA2G_04757 Descriptiontransposase insN for insertion sequence element IS911 StrainPseudomonas aeruginosa 2192 GI254243668 Locus TagPA2G_04494 Descriptiontransposase insN for insertion sequence element IS911 StrainPseudomonas aeruginosa 2192 GI254240350 Locus TagPA2G_00997 Descriptionhypothetical protein StrainPseudomonas aeruginosa 2192 GI254243668 Locus TagPA2G_04494 Descriptiontransposase insN for insertion sequence element IS911 StrainPseudomonas aeruginosa 2192 GI254240350 Locus TagPA2G_00997 Descriptionhypothetical protein StrainPseudomonas aeruginosa 2192 GI254243927 Locus TagPA2G_04757 Descriptiontransposase insN for insertion sequence element IS911 StrainPseudomonas aeruginosa 2192 GI254243927 Locus TagPA2G_04757 Descriptiontransposase insN for insertion sequence element IS911