Ortholog Set 3732828

Ortholog Set 3732829

Analysis ID	3732828
Cluster ID	3049
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3732830

Analysis ID	3732829
Cluster ID	3049
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3732831

Analysis ID	3732830
Cluster ID	3049
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3732832

Analysis ID	3732831
Cluster ID	3049
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3732833

Analysis ID	3732832
Cluster ID	3049
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3732834

Analysis ID	3732833
Cluster ID	3049
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3732835

Analysis ID	3732834
Cluster ID	3049
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3732836

Analysis ID	3732835
Cluster ID	3049
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3732836
Cluster ID	3049
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa M18
GI	386061444
Locus Tag	PAM18_5387
Description	secreted protein Hcp

StrainPseudomonas aeruginosa M18 GI386061444 Locus TagPAM18_5387 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386056327 Locus TagPAM18_0258 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386059680 Locus TagPAM18_3619 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386056327 Locus TagPAM18_0258 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386061444 Locus TagPAM18_5387 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386056327 Locus TagPAM18_0258 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386059680 Locus TagPAM18_3619 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa M18 GI386059680 Locus TagPAM18_3619 Descriptionsecreted protein Hcp

Ingroup 2

Strain	Pseudomonas aeruginosa 2192
GI	254243846
Locus Tag	PA2G_04674
Description	secreted protein Hcp

StrainPseudomonas aeruginosa 2192 GI254239861 Locus TagPA2G_00489 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa 2192 GI254239861 Locus TagPA2G_00489 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa 2192 GI254243362 Locus TagPA2G_04174 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa 2192 GI254243362 Locus TagPA2G_04174 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa 2192 GI254243362 Locus TagPA2G_04174 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa 2192 GI254243846 Locus TagPA2G_04674 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa 2192 GI254243846 Locus TagPA2G_04674 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa 2192 GI254239861 Locus TagPA2G_00489 Descriptionsecreted protein Hcp