Ortholog Set 3717541

Ortholog Set 3717542

Analysis ID	3717541
Cluster ID	3518
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3717543

Analysis ID	3717542
Cluster ID	3518
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3717544

Analysis ID	3717543
Cluster ID	3518
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3717545

Analysis ID	3717544
Cluster ID	3518
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3717546

Analysis ID	3717545
Cluster ID	3518
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3717547

Analysis ID	3717546
Cluster ID	3518
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3717548

Analysis ID	3717547
Cluster ID	3518
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3717549

Analysis ID	3717548
Cluster ID	3518
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3717549
Cluster ID	3518
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa RP73
GI	514412925
Locus Tag	M062_08085
Description	hypothetical protein

StrainPseudomonas aeruginosa RP73 GI514413382 Locus TagM062_27760 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412925 Locus TagM062_08085 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412689 Locus TagM062_01295 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412689 Locus TagM062_01295 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412689 Locus TagM062_01295 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514413382 Locus TagM062_27760 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412925 Locus TagM062_08085 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514413382 Locus TagM062_27760 Descriptionhypothetical protein

Ingroup 2

Strain	Pseudomonas aeruginosa 2192
GI	254239861
Locus Tag	PA2G_00489
Description	secreted protein Hcp

StrainPseudomonas aeruginosa 2192 GI254243362 Locus TagPA2G_04174 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa 2192 GI254243846 Locus TagPA2G_04674 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa 2192 GI254239861 Locus TagPA2G_00489 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa 2192 GI254243362 Locus TagPA2G_04174 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa 2192 GI254243846 Locus TagPA2G_04674 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa 2192 GI254243846 Locus TagPA2G_04674 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa 2192 GI254243362 Locus TagPA2G_04174 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa 2192 GI254239861 Locus TagPA2G_00489 Descriptionsecreted protein Hcp