Ortholog Set 3707556

Ortholog Set 3707566

Analysis ID	3707556
Cluster ID	4293
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3707565

Analysis ID	3707566
Cluster ID	4293
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3707564

Analysis ID	3707565
Cluster ID	4293
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3707563

Analysis ID	3707564
Cluster ID	4293
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3707562

Analysis ID	3707563
Cluster ID	4293
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3707561

Analysis ID	3707562
Cluster ID	4293
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3707560

Analysis ID	3707561
Cluster ID	4293
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3707559

Analysis ID	3707560
Cluster ID	4293
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3707558

Analysis ID	3707559
Cluster ID	4293
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3707557

Analysis ID	3707558
Cluster ID	4293
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3707567

Analysis ID	3707557
Cluster ID	4293
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3707567
Cluster ID	4293
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa LESB58
GI	218894369
Locus Tag	PALES_56611
Description	secreted protein Hcp

StrainPseudomonas aeruginosa LESB58 GI218892612 Locus TagPALES_38981 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218889003 Locus TagPALES_02591 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218889003 Locus TagPALES_02591 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218892612 Locus TagPALES_38981 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218894369 Locus TagPALES_56611 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218894369 Locus TagPALES_56611 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218889003 Locus TagPALES_02591 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218892612 Locus TagPALES_38981 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218889003 Locus TagPALES_02591 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218894369 Locus TagPALES_56611 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218892612 Locus TagPALES_38981 Descriptionsecreted protein Hcp

Ingroup 2

Strain	Pseudomonas aeruginosa NCGM2.S1
GI	386065492
Locus Tag	NCGM2_2553
Description	secreted protein

StrainPseudomonas aeruginosa NCGM2.S1 GI386065336 Locus TagNCGM2_2397 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386063243 Locus TagNCGM2_0270 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386065492 Locus TagNCGM2_2553 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386065492 Locus TagNCGM2_2553 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386063243 Locus TagNCGM2_0270 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386065336 Locus TagNCGM2_2397 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386068921 Locus TagNCGM2_6030 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386063243 Locus TagNCGM2_0270 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386065336 Locus TagNCGM2_2397 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386068921 Locus TagNCGM2_6030 Descriptionsecreted protein StrainPseudomonas aeruginosa NCGM2.S1 GI386068921 Locus TagNCGM2_6030 Descriptionsecreted protein