Ortholog Set 3664548

Ortholog Set 3664549

Analysis ID	3664548
Cluster ID	4245
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3664550

Analysis ID	3664549
Cluster ID	4245
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3664551

Analysis ID	3664550
Cluster ID	4245
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3664552

Analysis ID	3664551
Cluster ID	4245
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3664553

Analysis ID	3664552
Cluster ID	4245
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3664554

Analysis ID	3664553
Cluster ID	4245
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3664555

Analysis ID	3664554
Cluster ID	4245
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Ortholog Set 3664556

Analysis ID	3664555
Cluster ID	4245
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0

Analysis ID	3664556
Cluster ID	4245
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1	0
Ratio 2	0
Local FDR for Ratio 1	0
Local FDR for Ratio 2	0
Analysis Type	Reciprocal Best Blast No Ortholuge analysis performed on these strains. This may be the case when there is a very short phylogenetic distance between ingroup strains relative to an outgroup species.

Ingroup 1

Strain	Pseudomonas aeruginosa LESB58
GI	218889003
Locus Tag	PALES_02591
Description	secreted protein Hcp

StrainPseudomonas aeruginosa LESB58 GI218892612 Locus TagPALES_38981 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218892612 Locus TagPALES_38981 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218889003 Locus TagPALES_02591 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218889003 Locus TagPALES_02591 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218894369 Locus TagPALES_56611 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218892612 Locus TagPALES_38981 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218894369 Locus TagPALES_56611 Descriptionsecreted protein Hcp StrainPseudomonas aeruginosa LESB58 GI218894369 Locus TagPALES_56611 Descriptionsecreted protein Hcp

Ingroup 2

Strain	Pseudomonas aeruginosa RP73
GI	514412689
Locus Tag	M062_01295
Description	hypothetical protein

StrainPseudomonas aeruginosa RP73 GI514412925 Locus TagM062_08085 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412689 Locus TagM062_01295 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514413382 Locus TagM062_27760 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412925 Locus TagM062_08085 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412925 Locus TagM062_08085 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514413382 Locus TagM062_27760 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514413382 Locus TagM062_27760 Descriptionhypothetical protein StrainPseudomonas aeruginosa RP73 GI514412689 Locus TagM062_01295 Descriptionhypothetical protein