Ortholog Set 355704

Ortholog Set 355729

Analysis ID	355704
Cluster ID	3555
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1
Ratio 2
Local FDR for Ratio 1
Local FDR for Ratio 2

Ortholog Set 355728

Analysis ID	355729
Cluster ID	3555
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1
Ratio 2
Local FDR for Ratio 1
Local FDR for Ratio 2

Ortholog Set 355726

Analysis ID	355728
Cluster ID	3555
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1
Ratio 2
Local FDR for Ratio 1
Local FDR for Ratio 2

Ortholog Set 355725

Analysis ID	355726
Cluster ID	3555
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1
Ratio 2
Local FDR for Ratio 1
Local FDR for Ratio 2

Ortholog Set 355722

Analysis ID	355725
Cluster ID	3555
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1
Ratio 2
Local FDR for Ratio 1
Local FDR for Ratio 2

Ortholog Set 355721

Analysis ID	355722
Cluster ID	3555
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1
Ratio 2
Local FDR for Ratio 1
Local FDR for Ratio 2

Ortholog Set 355718

Analysis ID	355721
Cluster ID	3555
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1
Ratio 2
Local FDR for Ratio 1
Local FDR for Ratio 2

Ortholog Set 355717

Analysis ID	355718
Cluster ID	3555
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1
Ratio 2
Local FDR for Ratio 1
Local FDR for Ratio 2

Ortholog Set 355711

Analysis ID	355717
Cluster ID	3555
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1
Ratio 2
Local FDR for Ratio 1
Local FDR for Ratio 2

Ortholog Set 355708

Analysis ID	355711
Cluster ID	3555
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1
Ratio 2
Local FDR for Ratio 1
Local FDR for Ratio 2

Ortholog Set 355710

Analysis ID	355708
Cluster ID	3555
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1
Ratio 2
Local FDR for Ratio 1
Local FDR for Ratio 2

Ortholog Set 355706

Analysis ID	355710
Cluster ID	3555
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1
Ratio 2
Local FDR for Ratio 1
Local FDR for Ratio 2

Ortholog Set 355712

Analysis ID	355706
Cluster ID	3555
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1
Ratio 2
Local FDR for Ratio 1
Local FDR for Ratio 2

Analysis ID	355712
Cluster ID	3555
Ortholuge Class	No Ortholuge class assigned. This is often the case when a suitable outgroup species is available to perform Ortholuge analysis, however an outgroup ortholog is not available for this particular ortholog set. SSD Borderline Similar Non-SSD Divergent Non-SSD RBB
Ratio 1
Ratio 2
Local FDR for Ratio 1
Local FDR for Ratio 2
Analysis Type	Ortholuge

Ingroup 1

Strain	Pseudomonas aeruginosa DK2
GI	392985698
Locus Tag	PADK2_21580
Description	hypothetical protein

StrainPseudomonas aeruginosa DK2 GI392986092 Locus TagPADK2_23570 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983568 Locus TagPADK2_10840 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984027 Locus TagPADK2_13155 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392984027 Locus TagPADK2_13155 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985361 Locus TagPADK2_19875 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985361 Locus TagPADK2_19875 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983122 Locus TagPADK2_08570 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392985698 Locus TagPADK2_21580 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983122 Locus TagPADK2_08570 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983568 Locus TagPADK2_10840 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983576 Locus TagPADK2_10880 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392986092 Locus TagPADK2_23570 Descriptionhypothetical protein StrainPseudomonas aeruginosa DK2 GI392983576 Locus TagPADK2_10880 Descriptionhypothetical protein

Ingroup 2

Strain	Pseudomonas denitrificans ATCC 13867
GI	472327790
Locus Tag	H681_23145
Description	IS3 family transposase

StrainPseudomonas denitrificans ATCC 13867 GI472324379 Locus TagH681_06025 DescriptionIS3 family transposase StrainPseudomonas denitrificans ATCC 13867 GI472324379 Locus TagH681_06025 DescriptionIS3 family transposase StrainPseudomonas denitrificans ATCC 13867 GI472327790 Locus TagH681_23145 DescriptionIS3 family transposase StrainPseudomonas denitrificans ATCC 13867 GI472324379 Locus TagH681_06025 DescriptionIS3 family transposase StrainPseudomonas denitrificans ATCC 13867 GI472324379 Locus TagH681_06025 DescriptionIS3 family transposase StrainPseudomonas denitrificans ATCC 13867 GI472327790 Locus TagH681_23145 DescriptionIS3 family transposase StrainPseudomonas denitrificans ATCC 13867 GI472324379 Locus TagH681_06025 DescriptionIS3 family transposase StrainPseudomonas denitrificans ATCC 13867 GI472324379 Locus TagH681_06025 DescriptionIS3 family transposase StrainPseudomonas denitrificans ATCC 13867 GI472327790 Locus TagH681_23145 DescriptionIS3 family transposase StrainPseudomonas denitrificans ATCC 13867 GI472327790 Locus TagH681_23145 DescriptionIS3 family transposase StrainPseudomonas denitrificans ATCC 13867 GI472324379 Locus TagH681_06025 DescriptionIS3 family transposase StrainPseudomonas denitrificans ATCC 13867 GI472327790 Locus TagH681_23145 DescriptionIS3 family transposase StrainPseudomonas denitrificans ATCC 13867 GI472327790 Locus TagH681_23145 DescriptionIS3 family transposase

Inparalogs to Ingroup 2

Strain	Pseudomonas denitrificans ATCC 13867
GI	472324068
Locus Tag	H681_04470
Description	transposase InsF for insertion sequence IS3A/B/C/D/E/fA

Strain	Pseudomonas denitrificans ATCC 13867
GI	472326217
Locus Tag	H681_15275
Description	IS3 family transposase

Strain	Pseudomonas denitrificans ATCC 13867
GI	472324068
Locus Tag	H681_04470
Description	transposase InsF for insertion sequence IS3A/B/C/D/E/fA

Strain	Pseudomonas denitrificans ATCC 13867
GI	472326217
Locus Tag	H681_15275
Description	IS3 family transposase

Strain	Pseudomonas denitrificans ATCC 13867
GI	472326217
Locus Tag	H681_15275
Description	IS3 family transposase

Strain	Pseudomonas denitrificans ATCC 13867
GI	472324068
Locus Tag	H681_04470
Description	transposase InsF for insertion sequence IS3A/B/C/D/E/fA

Strain	Pseudomonas denitrificans ATCC 13867
GI	472326217
Locus Tag	H681_15275
Description	IS3 family transposase

Strain	Pseudomonas denitrificans ATCC 13867
GI	472326217
Locus Tag	H681_15275
Description	IS3 family transposase

Strain	Pseudomonas denitrificans ATCC 13867
GI	472324068
Locus Tag	H681_04470
Description	transposase InsF for insertion sequence IS3A/B/C/D/E/fA

Strain	Pseudomonas denitrificans ATCC 13867
GI	472324068
Locus Tag	H681_04470
Description	transposase InsF for insertion sequence IS3A/B/C/D/E/fA

Strain	Pseudomonas denitrificans ATCC 13867
GI	472324068
Locus Tag	H681_04470
Description	transposase InsF for insertion sequence IS3A/B/C/D/E/fA

Strain	Pseudomonas denitrificans ATCC 13867
GI	472326217
Locus Tag	H681_15275
Description	IS3 family transposase

Strain	Pseudomonas denitrificans ATCC 13867
GI	472326217
Locus Tag	H681_15275
Description	IS3 family transposase

Strain	Pseudomonas denitrificans ATCC 13867
GI	472324068
Locus Tag	H681_04470
Description	transposase InsF for insertion sequence IS3A/B/C/D/E/fA